FAQ GIPhy
Our FAQ is divided into several sections that are presented below.
Sequences
FASTA-formatted file manipulation
Sequence mining and searches
Sequence clustering
Multiple sequence alignment
Multiple sequence alignment conversion
Multiple sequence alignment manipulation
Multiple sequence alignment filtering
Phylogenetics
Distance matrix file conversion
Evolutionary distance estimates
Distance matrix manipulation
Distance-based tree inference
Maximum Parsimony tree inference
Maximum Likelihood tree inference
Bayesian-based tree inference
Branch confidence support
Consensus analyses
Tree rooting
NEWICK-formatted tree transformation
NEWICK-formatted tree manipulation
Dissimilarity between pair of trees
Phylogenetic tree generation
Phylogenetic tree editing