>rpoC.pfam04997
LKKIKEIQFGIASPEEIR-KWSVGEVTKPETYN--YGSLKPEEGGLLDERMGTIDKDYECETCGKKKK------------DCPG-------------HFGHIELAKPVFHIGFFKK--------------------TLKILECVCKYCSKLLLDPG---------------------KPKLFNKDK----KRLGLENLK-------------------------------------------------------MGAKAILELCKKKDLCEHCGGKNG--------------------------------------------VCGSQQPVSRKEGLKLKAAIKKSKEE-------------------------------------------------EEK-EILNPEKVLKIFKRISDEDVEILGFNP-SGSRPEWMILTVLPVPPPCIRPSVQLDGG---RRAEDDLTHKLRDIIKRNNRLKKLLELGA-PSHIIREEWRLLQEHVATLFDNEIPGLPP--ALQKSKRPLKSISQRLKGKEGRFRGNL
>gi|256599727|pdb|3H0G|M
LRRVEEVQFGILSPEEIR-SMSVAKIEFPETMD--ESGQRPRVGGLLDPRLGTIDRQFKCQTCGETMA------------DCPG-------------HFGHIELAKPVFHIGFLSK--------------------IKKILECVCWNCGKLKIDSS---------------------NP----KFN----DTQRYRDPK-------------------------------------------------------NRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNP-----------------------------SANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDES----------------------------------------------DLPEK-RLLSPLEVHTIFTHISSEDLAHLGLNE-QYARPDWMIITVLPVPPPSVRPSISVDGT---SRGEDDLTHKLSDIIKANANVRRCEQEGA-PAHIVSEYEQLLQFHVATYMDNEIAGQPQ--ALQKSGRPLKSIRARLKGKEGRLRGNL
>gi|380865455|sp|P16356.3|RPB1_CAEEL
LRIVSRVQFGILGPEEIK-RMSVAHVEFPEVYE--NG--KPKLGGLMDPRQGVIDRRGRCMTCAGNLT------------DCPG-------------HFGHLELAKPVFHIGFLTK--------------------TLKILRCVCFYCGRLLIDKS---------------------APRVLEILK----KTG--TNSK-------------------------------------------------------KRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDP--------------------------MNDGKKVAGGCGRYQPSYRRVGIDINAEWKKNVNED----------------------------------------------TQERK-IMLTAERVLEVFQQITDEDILVIGMDP-QFARPEWMICTVLPVPPLAVRPAVVTFGS---AKNQDDLTHKLSDIIKTNQQLQRNEANGA-AAHVLTDDVRLLQFHVATLVDNCIPGLPT--ATQKGGRPLKSIKQRLKGKEGRIRGNL
>gi|74583011|sp|O96452|O96452_ANTLO
KKRVKAIQFGLFSPEEIR-ASSVALIRYPETLE--NG--VPKESGLIDLRMGTTERDYLCATCNQDNY------------VCAG-------------HFGHIELVKPMFHVGFISR--------------------IKKVLECVCFYCSKVRINKN----------------------------------KTTITKESK-------------------------------------------------------HKLNFIWGICKNKMVCEDCNN---------------------------------------------------RQPVIKKEGLSLFAYMKGEENN-------------------------------------------------EGK-VMLNGERVYNIFKKINNEDLEFLGFNI-KYSRPEYMILSVLLVAPPAVRPSIVMEGT---LRGEDDLTYKYSDIIKSNQNLKKYEEEGA-PAHIIRDYEQLVQFHVATLIDNEISGQPQ--ALQKNGRPLKAISARLKGKEGRLRGNL
>gi|74583010|sp|O96446|O96446_9MICR
TKRISSIQFGLFSPEEIR-KSSVVQIIHPETME--NG--FPKSGGLIDLKMGTTERAFLCSSCEKDNF------------SCPG-------------HFGHIELTKPMFHVGYMTK--------------------IKKILECVCFYCSRLKIST----------------------------------------KNLK-------------------------------------------------------KDLNFVWNISKTKSVCEGEIGENGF------------------------------------------TGCGNKQPVIKKEGMSLIAFMKGEEES-------------------------------------------------DGK-VILNGERVHNILKKIVNEDAVFLGFDQ-KFTKPEWLILTVLLVPPPSVRPSIVMEGM---LRAEDDLTHKLADIVKANTYLKKYELEGA-PGHVVRDYEQLLQFHIATMIDNDISGQPQ--ALQKSGRPLKSISARLKGKEGRVRGNL
>gi|41018119|sp|Q98Q24.1|RPOC_MYCPU
EEKILKVSLSLATKEDVL-EWSHGEVTKPETIN--YKSYKPERHGLFDELIFGPATDYKCPICGKKYKKSNEGLTCNNTPQCEIEKPEILPKISRRSRMGHIALQTPVVHFWFFKIDNSIISKLLVLRVGESNEYVSKNDLENIIYYKSHIVLDNGGLK---------------SLPKNKIININNAAQIYKDALIELRELNLNDADALEIIDGTINHLNDIVGS---KVGNDYGVDFYELNEVIEEYSSAKIQTGSKAIEFLLENIDL--------------------------------------------------------------EEEQRKIKSKIKEINN--------------------------------------------------LEKTSSSRKQDLSKLYKRLQ----VVESFIN-SGQKPTSMLIYNLPVIPAELRPLVQLDGG---RHSTSDINELYRRIIIRNNRLRKWIELNA-PTLITQNELRMIQEAVDALIDNSKKKPKP--VTSKDNRNLKSISDALTGKKGRFRQNL
>gi|83767526|dbj|BAE57665.1|
LRTIKEIQFGLFSPEEIK-RMSVVHVEYPETMD--EQRQRPRTKGLNDPRLGTIDRQWNCETCEEGQK------------ECPG-------------HFGHIELATPVFHIGFLTK--------------------IKKLLETVCHNCGKIKANTS---------------------DS----KFL----EALRMRDPK-------------------------------------------------------RRFDHIWRLSKDITICEADPPPDEDEPYAKES----------------------------SKPTRMHGGCGNAQPTIRKEGITLVGTWKPSKSMMDEM-----------------------------------------DMQQPEK-KTITPQMALNIFRNISHEDVRIMGLSN-DYARPEWMVLTVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGA-PEHVVREFESLLQYHVATYMDNDIAGQPK--AMQKSNRPVKAIRSRLKGKEGRLRQNL
>gi|753534189|pdb|4V1M|A
LRTVKEVQFGLFSPEEVR-AISVAKIRFPETMD--ETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMN------------ECPG-------------HFGHIDLAKPVFHVGFIAK--------------------IKKVCECVCMHCGKLLLDEH---------------------NE----LMR----QALAIKDSK-------------------------------------------------------KRFAAIWTLCKTKMVCETDVPSEDDPTQL-----------------------------------VSRGGCGNTQPTIRKDGLKLVGSWKKDRATGD--------------------------------------------ADEPEL-RVLSTEEILNIFKHISVKDFTSLGFNE-VFSRPEWMILTCLPVPPPPVRPSISFNES---QRGEDDLTFKLADILKANISLETLEHNGA-PHHAIEEAESLLQFHVATYMDNDIAGQPQ--ALQKSGRPVKSIRARLKGKEGRIRGNL
>gi|75261693|sp|Q98RN1|Q98RN1_GUITH
KNFIHEIEFKIFSREEIS-GYSTIQLTNSNIFL--KDKNTSQEGSLLDEKLGNI-RNQICSFCKDKFK------------FCQG-------------HYGHLRLSMPVLNLGFIKT--------------------IQCILQMVCKRCSSLLLRSS---------------------KEKIHFSFLLGKNSNNKVEKKK--------------------------------------------------------IYFNILEKCKSHRKCPNCEF--------------------------------------------------SNGKIRKISNLAFLHDIDNSKN--------------------------------------------------EIN-EILGPLKIFQIFSKINAEDLELIGVND-YGFRIENLIFFFIPIPPSIIRPSIRIDTY---TTNEDDLTIKLASIQNTNKKLKYELEQNM-NYNRIKELWTFLQIECYQYFDSDF-------FQKKFNLKFQGVFQRLKGKNGRFRGTL
>gi|133354|sp|P27625.1|RPC1_PLAFA
NCEIKSIRFGIMSKEDII-KYSEVKIMNREMYK--NNSGIPYPYGVLDLKLGAHKSNSVCETCNKKLI------------NCSG-------------HFGYIELNYPVFHIGYYKY--------------------IIHILYCICKYCSSLLLSKE---------------------KIDFYCNLK----KKSTDDSFYK-----------------------------------------------------KHLFKRILNNCKKVNKCYICGNPQGV--------------------------------------------IKKIIKPSLDQFMKLKHILKVKENGK----------------------------------------------MIIKE-EDLNSLYVLKLFKNINPYHVKLLNIEN-----PEKLIITALLVPPNTIRPSVIIDEH---GTAEDDLTCILSEITQLNNTIYNQCTNGY-QTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNL
>gi|9297042|sp|O94666.1|RPC1_SCHPO
PKRIKHLQFGINGPEEFV-KDGTVEVSRRDLYT--MTDRSPAEHGALDLHMGTSNKQINCATCGESMA------------DCMG-------------HFGYVKLALPVFHIGYFKA--------------------TLTILQNICKDCSSVLLSDQ---------------------EKRQFLKDL----RRPGIDNLRR-----------------------------------------------------SQICKRINDHCKKMRRCSKCDAMQGVVKKAGPL----------------------------KIIHERFRYVRKSQDDEENFRHSFDEALKTIPELKM--------------------------------------------HLSKAH-DDLNPLKVLNLFKQITPVDCELLGMDP-EHGRPENLLWRYVPAPPVCIRPSVAQEG----ATTEDDLTVKITEIIWTSSLIRAALSKGT-PISNLMEQWEFMQLSIAMYINSEMPGLRP---SDMPSKPIRGFCQRLKGKQGRFRGNL
>gi|1975119722|pdb|7AE1|A
AKKISHICFGMKSPEEMR-QQAHIQVVSKNLYSQ-DNQHAPLLYGVLDHRMGTSEKDRPCETCGKNLA------------DCLG-------------HYGYIDLELPCFHVGYFRA--------------------VIGILQMICKTCCHIMLSQE---------------------EKKQFLDYL----KRPGLTYLQK-----------------------------------------------------RGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLK---------------------------IIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEP--------------------------------------------LLGRAQ-ENLNPLVVLNLFKRIPAEDVPLLLMNP-EAGKPSDLILTRLLVPPLCIRPSVVSDLKS--GTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQMIMEDWDFLQLQCALYINSELSGIPL---NMAPKKWTRGFVQRLKGKQGRFRGNL
>gi|74963043|sp|Q18566|Q18566_CAEEL
ALKVVGVKFAPGDCEFMR-QTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVSTKTGTCSTCGLGLT------------DCVG-------------HFGYFDLDVPVFHIGFFKL--------------------TIQLLQCICKNCSSILLTPE---------------------QHRVFSRQV----MNPNLDYLHR-----------------------------------------------------KALHKRIVAACKKGSTCSHCGLKNGTVKKA----------------------------------VGAVLKIAFASPVSVDELGKFATMFSSNQEVGD--------------------------------------------HVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKA--GTTEDDVTMKLMEIMLTNDVLKKHKRDGA-PSKTLFETWEHLQIQCALYINSEMSGLPP---DMQPKRAMRAFTQRLKGKQGRFRGNL
>gi|257168888|gb|ACV46647.1|
PKSISSISFGLMDPEEYR-DMSATKVITADTYD--DDG-FPIDMGLMDPRLGVIDPGLECKTCGKHSG------------SCNG-------------HFGHIELAAPVIHVGFNKL--------------------IRRLLRGTCRECSRLCLDER---------------------ER----------------EEFE-------------------------------------------------------DRLERSEELGKDVNDVTKAAIRQARKKDRCPFCGEP---------------------QYDIKHEKPTTYYEVQDVLSSEYSQRIVAAMEPDEEAGRERTTPSELADETGIDPSRVQEIISGEFRPRQDDRRAIESALDVDLTEEDE-NKLMPSDIRDWFEDIPDEDVEVLGMKP-ARSRPEWMILTVLPVPPVTARPSITLDNG---QRSEDDLTHKLVDIIRINQRFMENREAGA-PQLIIEDLWELLQYHVTTFMDNEISGTPP--ARHRSGRPLKTLSQRLKGKEGRFRGSL
>gi|74849349|sp|Q9NJR9|Q9NJR9_LEIDO
LQKVHEVQFEVFKEAQIK-AYAKCIIEHAKSYE--HG--QPVRGGINDLRMGTTDFEYSCETCGLKHP------------ECPG-------------HFGYVELAEPIFNINVFDV--------------------VLIALKCVCKYCGALLMDTN---------------------DPSEMKKIA----HLQGLNRLR-------------------------------------------------------MVAKLCGSVCKRSKDIQGCEGK------------------------------------------------GRQPRIGRFAGIYPGLQIKVTQE--------------------------------------------------EQD-YVWHAENARQVLDRVSDSDALIMGFDP-RFCHPRDLILTVLPIPPPQVRPAVAFAS----AKSDDELTHQIMSIVKRNIQLRKDKESGV--KAAVDRSRALLQEHVATFFNNASTYYKP--AKVGDTKKLKSLTERLKGKYGRLRGNL
>gi|133329|sp|P17545.1|RPB1B_TRYBB
LHKVNEVQFEIFKERQIK-SYAVCLVEHAKSYA--NAADQSGEASMICVWVPLTSNS-ACETCHRKHP------------ECPG-------------HFGYIELAEPVFNIGVFDL--------------------VLLVLKCVCKTCGALLLNTR---------------------EQDVHKKLQ----HMTGLNRLR-------------------------------------------------------QVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGS-------------------------GMGPGATRGCGASQPRVSRFYGIYPTLVIKAVHE--------------------------------------------------EQD-AEWHADKVRQVLDRVSDDDARLMGFDP-QRCHPRDLVLTVLPVPPPQVRPAISFGG----LRSDDELTHQIMSIVKRNNQLRRDKESDV--QAAIDRSRALLQEHVATYFNNASTYYKP--TKVNDTKKLKSLTERLKGKYGRLRGNL
>gi|75462932|sp|Q9AIH0|Q9AIH0_CARRU
KSIFKKVSIKMASSSKIL-SWSFGEVTHSNFIN--FKNLKPEPNGLFCLKIFS---DFEL-CCLKKKC------------FCHSDKFLNLKKAHTGYKVGHIKLFYPAVHIWYIKSSHSNIS---------NILNLSYKILEKIINFKLKVVIKSYDIK----------------IKKFNLFIFDK----KIKNIIFTL-------------------------------------------------------SGAKALKKLLSDREL--------------------------------------------------------------FIDCLILKIKIKKCNS----------------------------------------------------------FSKLFSILKHIN----KILIFYY-SGNKPSWMVLKKTPVLPPRMRPLIALSEK---KFASSDINELYKIVLERNYKLKKMTTYLD-PKQLLINERISLQESIYALFDNEKLI-NP--ILTSSKRVLKSFSSLIKGKYGRFRQNL
>gi|41018147|sp|Q9KW13.1|RPOC_SHEVI
TEEFNGIKIGLASPDLIR-SWSFGEVKKPETIN--YRTFKPEREGLFCARIFGPVKDYEC-LCGKYKRLKHRG---VICEKCGVEVTQT---KVRRERMGHIDLASPVAHIWFLKSLPSRIG---------LMLDMTLRDIERVLYFESFVVIEPGMTS----------------LERGQMLTEES----YLDALEEYGDEF-------------------------------------------------EAKMGAEAVLELLRAIEL--------------------------------------------------------------EKEIESLREELPSINS----------------------------------------------------------ETRRKKMTKRLK----LIEAFFH-SGNKPEWMILKVLPVLPPDLRPLVPLDGG---RFATSDLNDLYRRVINRNNRLKRLLDLAA-PDIIVRNEKRMLQESVDALLDNGRRG-RA--ITGSNKRPLKSLADMIKGKQGRFRQNL
>gi|3914812|sp|O51349.1|RPOC_BORBU
IKDFERIKIKIASPDQIR-NWSYGEVKKSETIN--YRTLRPEKDGLFCERIFGTTKEWEC-YCGKFKSVRYKG---IICDRCNVEVTHF---KVRRERMGHIELAAPVAHIWYYKYIPSRIG---------LLLDITASSLNSILYYEKYVVIEPGDTD----------------LKKMQLLNEDE----YIEARERYGMSF-------------------------------------------------NASMGAEAIKTLLENLDL--------------------------------------------------------------DELSSKLRIQMIDKDD-----------------------------------------------------------KTDKKLLRRLE----IIENFKI-SGNKPEWMIMEVLPVIPPEIRPMVQLDGG---RFATSDLNDLYRRVINRNNRLRKLLLLNA-PEIIVRNEKRMLQESVDSLFDNSHKR-KV--VKGSSSRPLKSLSDALKGKQGRFRQNL
>gi|6094127|sp|O83270.1|RPOC_TREPA
IRDFDSLQIKLASPDTIR-AWSYGEVKKPETIN--YRTLRPEREGLFCERIFGTTKEWEC-FCGKFKSIRYRG---VICDRCGVEVTHF---KVRRERMGHIELATPVSHIWYYRCVPSRMG---------LLLDLQVIALRSVLYYEKYIVIEPGDTD----------------LKKNQLLTETE----YNDAQERYGGGF-------------------------------------------------TAGMGAEAIRTLLQNLDL--------------------------------------------------------------DALVAQLREKMMEKGA-----------------------------------------------------------KSDKRLLRRIE----IVENFRV-SGNKPEWMILSVIPVIPPDLRPMVQLDGG---RFATSDLNDLYRRVIHRNSRLIRLMELKA-PDIIIRNEKRMLQEAVDALFDNSKRK-PA--IKGASNRPLKSISDMLKGKQGRFRQNL
>gi|6647772|sp|O84316.1|RPOC_CHLTR
EGLFDKLEIGIASDVTIRDKWSCGEIKKPETIN--YRTFKPEKGGLFCEKIFGPTKDWEC-YCGKYKKIKHKG---IVCDRCGVEVTLS---KVRRERMAHIELAVPIVHIWFFKTTPSRIG---------NVLGMTASDLERVIYYEEYVVIDPGNTD----------------LVKKQLLNDAK----YREVVEKWGKDAF------------------------------------------------VAKMGGEAVYDLLKSEDL--------------------------------------------------------------ESLLGELKERLRKTKS----------------------------------------------------------QQARMKLAKRLK----IVEGFVS-SSNRPEWMVLKNIPVVPPDLRPLVPLDGG---RFATSDLNDLYRRVINRNNRLKAILRLKT-PEVIVRNEKRMLQEAVDALFDNGRHG-HP--VMGAGNRPLKSLSEMLKGKNGRFRQNL
>gi|1338497671|sp|P47582.2|RPOC_MYCGE
YKNIKAIKLSIASNDTIL-NWSEGEVTKAETIN--YKSLKPEPGGLFDEAIFGPVKDYEC-ACGKFKKIKYRG---VRCDRCGVWVTES---IVRRERMGHIALVSPVAHIWMSKELPSPSKI-------SLVLNISYKEVEQVLYFVNYIVLDTGKIKDDKIMPF-KFKEVLDLTGKGSLSTRQK----MRRVIGYIFRNLIKSKSSEDYRKGKIFYESLKN--------SSLPFSLNDAFNYIKKYTGFRVGIGAEAILELLNKIDL--------------------------------------------------------------NLEFSRLNDALRKAKK------------------------------------------------------DSVEDAKVKKILRQLE----TISWFRN-SKLHPKNMILHTVPVIPPDIRPIIQLDGA---KFTTSDINNFYRRVIIRNDRLRRILEDGTVPSIVVNNEKRLLQESVDALFDNSSRH-KP--SLSKDKRSLKSLTDRLKGKQGLFRHNL
>gi|14195188|sp|Q9PQV5.1|RPOC_UREPA
QKGIKSLTISIASPEQIL-NWSKGEITKPETIN--YKSLKPEPNGLFDESIFGPSKDYEC-YCGKYRKVKHKG---KICERCHVEITES---IVRRERMGHIELAAPVAHIWFTKELPSPSKI-------SLLLDITYKEVDQVVYFVNYIVLDEGNNVYDGKSIFNKKEVLDLTSPKNSIRSRNK----LRRTLRNIQERIEDELNHEREALIQDFDYRLAVTYDQMLKDSNIPFSVKDVMAFIEKHTGVRFGIGAEAIRELLEKLNL--------------------------------------------------------------EEEHEKIKQAIQNSPN--------------------------------------------------------AYDQKTKRLLRRLE----CVRWIKD-SGSKPEWMVMTRIPVTPSETRPIISLDGG---RFTTSDTNNFYRKIIIRNERLKQMQATDA-PEILLDNEKRLLQEAVDSLFDNNSRK-KP--VVGKDKRPLKSLSNHLKGKQGLFRQNL
>gi|74837259|sp|O77375|O77375_PLAF7
LKRVKRLELGVLDPEIIK-KISVCEIVNVDIYK--DG--FPREGGLNDIRMGTIDYRTLCGTCNMNVK------------YCPG-------------HFGHIELAKPMYHYGFMNV--------------------VLNVLRCVCYHCGRLLCNVN---------------------SS----KVK----YIEKIKVNS-------------------------------------------------------LRLRKLAELCLGIRACDHSVEEEGLNINDNSLNNFYNNDLSNLNMNQQMLLNKSNYTNIFEMVSKEDVDCGCVQPKYSREGPNMYIQFLHSSEED----------------------------------------------IDESK-RKLSAEEALEILKKIRKEEMSILGFNS-DRCVPASLILTCIPIPPPCARPYVQYGN----QRSEDDLTLKLLDIVKTNIQLKRQTDRGA-KSHVLQDLCSLLQFHITTLFDNDIPGMPI--ATTRSKKPIKAIRTRLKGKEGRLRGNL
>gi|75261917|sp|Q9AXN0|Q9AXN0_9EUKA
VKKVKAVQFGVLSPDEIR-RMSVCEIKFETAFE--MG--KPKTEGLMDPRLGAIGRDLPCKTCHCDEK------------NCPG-------------HFGHIELVKPMFNIGFFGM--------------------TLRVLRCVCFFCSKLLIDPR---------------------DPKADFEVK----KVLRIKNRI-------------------------------------------------------NRLKKVQNLCSKVKICKHCSN---------------------------------------------------EQPKFAKEGLQFRAEFKGSADDT-----------------------------------------------MEKK-QIVSAEKVLSIFKHISDDDIEIMGLSP-QHSRPEWFILTLFPVPPPHIRPSVMMDAS---MRGEDDLTYKLGDIVRNNNALREMERTGA-PAHRLNEQIHVLQAHIITIMNNDLPGMPR--AHQKSGRPIKSISQRLKGKEGRVRGNL
>gi|75272823|sp|Q9AVW8|Q9AVW8_GUITH
EKLIKLIQFGILSPDEIL-KLSVVQVDSDMTFE--HN--LPKLGGLLDQRMGTVDKEFFCTTDMGSFL------------ESPG-------------YFGHISLNRPVFHEGFMDY--------------------VLRILRCIDHTTSKLIINEN---------------------SQ----KIK----NVLKIKNLS-------------------------------------------------------QRLNIISKLCLTACNLKKNKFNNFLK-------------------------------------DEIIEKRISIQPKYSRDGWCIVAKFDSRITS-------------------------------------------------EPT-RLVSAERIHEIFVKITDEACEKLGLNP-KLSRPDWMIITVLPVPPPTIRPSVKFETL---LRAEDDLTYKLGDIIRTNKILRKAIFSCL-PSQLINEQINLLQYHIGSYMNNSVPSLAK--SLQKSGRPIKSIKQRLQGKEGRLRGNL